SPANG >> Library >> UniProt

SPARQL library for UniProt


UniProt SPARQL endpoint

Select SPARQL template

count_org
Count proteins for each organism

filter_by_go
Filter UniProt IDs by GO annotation
(ex: GO_0045202)

filter_by_go_ancestor
(ex: GO_0045202)

filter_by_go_direct
SELECT ?uniprot ?uniprot_label
(ex: GO_0045202)

function
Function annotation
(ex: K9Z723)

gene
From UniProt ID to gene name
(ex: K9Z723)

go_ratio
Set of UniProt IDs to GO annotations with ratio

info
(ex: K9Z723)

list_disease

list_go
List of GO IDs

list_organism
List of organisms associated with UniProt IDs

list_protein_of_org
(ex: tax:511145)

list_uniprot
List of UniProt IDs

search_disease
(ex: diabetes)

tax2ancestor
TaxID to ancestor
(ex: Phylum)

tax_count_descendants
Count TaxIDs under a given TaxID
(ex: 511145)

tax_uri_ancestors
Taxonomic hierarchy for
(ex: tax:511145)

taxtree_ancestor
Higher taxa of a NCBI taxonomy ID (ordered by taxonomic levels; only for Virtuoso)
(ex: 511145)

uniprot2annot
?organism

uniprot2disease

uniprot2disease_annot

uniprot2go

uniprot2go_count

uniprot2go_count2

uniprot2go_ratio

uniprot2go_ratio2

uniprot_annot
Get UniProt annotations
(ex: P02649)

uniprot_annotation
(ex: K9Z723)

uniprot_disease
(ex: P00918)

uniprot_go
(ex: Q9Y2J0)

uniprot_go_count

uniprot_go_count_all

uniprot_go_ratio

uniprot_xref
Get cross-reference from UniProtID to other database
(ex: PDB)